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Secure data export — QuantaSoft data table can be exported as secure PDF; For optimal performance, it is recommended that users use the laptop sold by Bio-Rad for the QX100 or QX200 ddPCR System. Download the instruction manual to learn more about QuantaSoft Software, Regulatory Edition and the QX200 Droplet Digital PCR System. Free bio rad cfx manager mac download software at UpdateStar - 1,746,000 recognized programs - 5,228,000 known versions - Software News. Bio rad cfx manager mac. Data must be exported as CSV files from QuantaSoft. After loading the data, select the 'Setup' tab, click on the 'Options' link on the right panel to reveal the options. The link will change to 'Hide Options' as shown in the figure below. Use the 'Export Amplitude and Cluster Data' link to export the CSV files to a selected directory.
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Classify 2-d Droplet Digital PCR (ddPCR) data and quantify the number of starting molecules
Bioconductor version: Release (3.12)
The twoddpcr package takes Droplet Digital PCR (ddPCR) droplet amplitude data from Bio-Rad's QuantaSoft and can classify the droplets. A summary of the positive/negative droplet counts can be generated, which can then be used to estimate the number of molecules using the Poisson distribution. This is the first open source package that facilitates the automatic classification of general two channel ddPCR data. Previous work includes 'definetherain' (Jones et al., 2014) and 'ddpcRquant' (Trypsteen et al., 2015) which both handle one channel ddPCR experiments only. The 'ddpcr' package available on CRAN (Attali et al., 2016) supports automatic gating of a specific class of two channel ddPCR experiments only.
Author: Anthony Chiu [aut, cre]
Maintainer: Anthony Chiu <anthony at achiu.me>
Biorad Quantasoft
Citation (from within R, enter citation('twoddpcr')):
Installation
To install this package, start R (version '4.0') and enter:
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Bio Rad Quantasoft Mac Download Mac
To view documentation for the version of this package installed in your system, start R and enter:
| HTML | R Script | twoddpcr: A package for Droplet Digital PCR analysis |
| Reference Manual | ||
| Text | NEWS |
Details
Bio Rad Quantasoft Mac Download
| biocViews | Classification, Software, ddPCR |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (4 years) |
| License | GPL-3 |
| Depends | R (>= 3.4) |
| Imports | class, ggplot2, hexbin, methods, scales, shiny, stats, utils, RColorBrewer, S4Vectors |
| LinkingTo | |
| Suggests | devtools, knitr, reshape2, rmarkdown, testthat, BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | http://github.com/CRUKMI-ComputationalBiology/twoddpcr/ |
| BugReports | http://github.com/CRUKMI-ComputationalBiology/twoddpcr/issues/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | twoddpcr_1.14.0.tar.gz |
| Windows Binary | twoddpcr_1.14.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | twoddpcr_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/twoddpcr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/twoddpcr |
| Package Short Url | https://bioconductor.org/packages/twoddpcr/ |
| Package Downloads Report | Download Stats |